MtbRegList
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Annotated motifs
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Intergenic region
Gene
Choose a gene product component to search
Protein
Untranslated RNA
Intergenic Region Search Parameters
Name
Coordinates (bp)
From:
To:
Equals
<=
>=
Equals
<=
>=
Length
Equals
<=
>=
Status
Any
Promoter +
Promoter -
Divergent
Terminator
Multiple selection is allowed (use ctrl key)
Sequence
Both strands
Strand +
Strand -
contain(s)
do(es) not contain
5' flanking sequence
Both strands
Strand +
Strand -
contain(s)
do(es) not contain
3' flanking sequence
Both strands
Strand +
Strand -
contain(s)
do(es) not contain
Gene Search Parameters
Name
Coordinates (bp)
From:
To:
Equals
<=
>=
Equals
<=
>=
Length
Equals
<=
>=
Sequence
contains
does not contain
Protein Search Parameters
Name
Functional category
Any
Virulence, detoxification, adaptation
Lipid metabolism
Information pathways
Cell wall and cell processes
Stable RNAs
Insertion seqs and phages
PE/PPE
Intermediary metabolism and respiration
Unknown
Regulatory proteins
Conserved hypotheticals
Conserved hypotheticals with an orthologue in M. bovis
Multiple selection is allowed (use ctrl key)
Molecular mass (Da)
Equals
<=
>=
Length
Equals
<=
>=
COG
Isoelectric point
Equals
<=
>=
Sequence
contains
does not contain
Description
contains
does not contain
Untranslated RNA Search Parameters
Name
Description
contains
does not contain
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